PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_3CA0FC03E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 130aa    MW: 14839.1 Da    PI: 10.4345
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_3CA0FC03E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.72.4e-1013525190
                   FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                            r+++ ++r+gC+a++++ +++d+ w++++ +  HnH+l+
  Traes_2BS_3CA0FC03E.1 13 IRENSRSSRCGCNAMIRLLRSNDKGWYIAEHKDAHNHPLS 52
                           578889********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-71452IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MQEIVCACAG KPIRENSRSS RCGCNAMIRL LRSNDKGWYI AEHKDAHNHP LSLTCGQKLH  60
WKSHRHIDRY TKDLVKQLRD NNVGLGKVFS IVGSFFGSVD NVPFTKRSLK TLCRKLNREQ  120
SDMDAVKRAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.12e-68PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5BJI53e-94W5BJI5_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.12e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-06FAR1-related sequence 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]